Obviously, different speakers/distances can impact level match. When I use all 28db gain amps with the Denon 4700 in multi-channel stereo mode (after Audyssey config) the sound level meter matches well as I move from speaker to speaker. However, with Purifi amp on fronts in multi-channel mode, fronts consistently measure 1-2db lower in various music passages compared to the Monolith amp powered speakers (7.2.4 setup). Audyssey level match shows compensation has been made for the 26.5db gain Purifi amp but the sound level meter still indicated a volume mismatch. Once I moved back to Monolith amps for all channels the issue disappeared.
Only in Multi-Channel stereo are all speakers playing the same source and simply duplicating it across five pairs of speakers. That's where you have the best opportunity to detect level match differences with a sound level meter.
Can you actually hear that 1-2db difference when music is playing? That would be very impressive if you could. For most people, that would be below the threshold of detecting a difference and would make zero difference for them.
Can you also adjust individual channel levels after processing in the Denon? If so bump up those channels a couple or bump down the other ones? "Problem" would be easily solved. I have never used a Denon so not sure. On the brands I have used though, that was always possible, and I have because the auto setup didn't do the best job.