That's one of the only things from Toole I find dumb, as the argument is completely wrong. The idea that mono shows more MOS difference -> correctness is not backed by anything. It's the same as making people wear ball and chain during a 100 m sprint because it makes the variance in times larger; it makes more evident who's the strongest, but not the fastest.
It is explained in various papers and his books. And he is a poster here so feel free to call him out. Again.
Shouldn’t an audible difference in the Revel with a speaker stacked on top be measurable? If so, could you measure it both with and without the Genelec on top and see if there is any difference?
I suspect that, given the listening distance and relative size of the speakers, that stacking is the optimum approach in this particular instance. Measuring the stacked and side-by-side configurations should highlight any differences. My previous experience with the AB,AB approach mainly in large'ish dealer demo rooms (where I worked at the time) is that it was very difficult to do a valid stereo test in-room. The image would shift just slightly switching from pair to pair, making it easier to identify them, although realistically the vast majority of the time the differences were so obvious it didn't really matter.
General random thoughts: I would not use EQ or subs to compare speakers. If your goal is to determine which system (speaker plus sub) is best for you under your preferred scheme, then by all means do it that way. Or both ways! (Not my time, might as well do every possible configuration. ) But in general I prefer to minimize variables. I'd guess the Salon2's have an advantage in extended bass (but did not look up the Genelecs) so you may, or may not, want to limit the LF signal to the speakers. I would do it mono since the focus is on speaker performance. Direct sound should not be significantly affected by having a pair, so a mono test is valid (for other reasons see the writings of Toole et. al.), and a pair introduces a myriad of other variables.
FWIWFM - Don