Sounds really strange. You mean your volume issue happened only when in Independent BTL mode?? And is back to normal when in Master-Slave BTL Mode??
When using Independent BTL mode => does the louder volume always happens with the same amp unit? You said louder left-channel (the master unit).
What happen if you reverse the 2 units (swap slave unit/R-Ch to be the Master unit/L-Ch) => does it now show louder volume in the slave/R-CH now??
When in Master-Slave BTL mode (no issue) => Both A300 units has the same volume settings?? Max 60?? And the Preamp balance control is centered(if any)??
Personally I feel the Master-Slave BTL mode is kinda odd and less clean connection wise; need an extra interconnect too.
They should have just released a power amp version without that BTL master slave stuff.