Please give your graphs proper names so that we know what we are looking at. You say that the earlier measurements which showed comb filtering was because the mic was placed extremely nearfield to the speaker. I can believe that this will produce comb filtering between drivers. So why the heck did you name it "L+R"?!?!?!?!? Why would you place the mic close to one speaker and then sweep them both together??!?!?
Anyway let's look at your new curves.
All these curves show that your UMIK-1 is working as expected. The only difference is SPL and the shape of the curve, probably because you were measuring from a different position. In fact, I KNOW that you were measuring from a different position because the pattern of reflections in the energy-time curves is different between all of them.
I can tell that you have a subwoofer, even though you did not provide that information. How do I know? Because these two curves (both labelled "L+R Mar 13" from file "D90SE -15dB 48kHz") have the exact same frequency response:
But the step responses are different:
You can see that the subwoofer is delayed in the green curve and the speaker can be clearly seen as a separate impulse.
These 4 graphs are all different:
All of them deviate from the measurements as shown before. So, if your mic is faulty, these are the curves that demonstrate deviations from all the other measurements. Did the sweep sound the same with all the impulses? The only curve that suggests a microphone glitch to me is the blue curve. All the others look as if you are sweeping part of the frequency response only, for example green probably has the subwoofer turned off? But let us look a bit closer at the pink and red curves to show you what I mean.
This is the pink curve ("L+R Mar 13" from "-25dB near field AND bad mic") compared to the blue curve from the same file "-25dB near field AND bad mic"). You can see that the two measurements are exactly the same up to 5kHz, when the pink curve drops in level.
This is the red curve from the same file ("-25dB near field AND bad mic"). You can see that it matches the blue curve exactly except for below 3kHz.
If you sum the purple curves and the red curve together (result = green curve), it replicates the blue curve exactly, except for a dip between 3kHz and 4kHz. The dip can be explained from a difference in phase because of different mic positions between the measurements (which I can easily see on the Energy-Time Curve). This looks as if you are measuring the high-pass filter and low-pass filter of the speaker independently.
Anyway I am finding this exercise quite frustrating because of the poorly labelled graphs, the missing information, the fact that all the measurements were taken from different positions, and so on.
If you suspect your microphone is faulty, please do this: take 20 measurements from the exact same position, with your mic on a tripod. DO NOT make any changes in position, REW configuration, volume level, or anything else. Do not touch your mic. NO CHANGES between measurements. Set it up, take 20 measurements, and listen to the sweep every time to make sure each sweep sounds the same. If you do not see any microphone glitches, take another 20 measurements. Keep repeating and discarding measurements until you see a microphone glitch. Then make an .MDAT, keeping 5 "normal" measurements with all the glitched measurements, and upload that to ASR.