Those boxes are quite complex.
I'm still wondering if there is not some DSP processing in the audio chain.
The fact that it resamples to 96kHz seems to indicate that.
And it looks like to force "Direct" mode is not so straightforward. I had a look at the manual, and in page 24, they describe how to get stereo "without surround enhancement". But I guess you checked that.
Would there be a way to check if a DSP is in the loop and what it's doing if that's the case ?
I can't think of a measurement for that, though.
I wonder what the impact of "surround ennhacement", or Dirac correction would be on measurement. Any idea?
Thinking again, the presence of a "surround" processor in the "stereo" inputs loop could maybe also explain why we see much better performance from the 7.1 Analog input. Because, of course, this makes no sense to add such processing on those.