Yes, it's unusual... and have you tried it with GPIO 8 AND 9?
(And one more thing, just in case, are your DAC firmwares up to date?)
I have not played with the physical board connections yet. Since the effect is so net (absolutely no issue with the previous firmware versions), I don't expect this to make any difference. But I can cover that once I find a bit of time.
I did try something in the meantime:
- Temporarily re-routed SPDIF 1 to GPIO 5 (so that GPIO 6, which worked so far irrespective of firmware version, is available)
- Disabled SPDIF 1 from matrix mixer
- Re-routed SPDIF 2 to GPIO 6. Optic fibre cable connected to the correct (GPIO 6) Toslink transmitter
No sound.
Re-enabled SPDIF 1 in matrix mixer and assigned it to GPIO 7.
I get sound from GPIO 7-connected Toslink transmitter. Still no sound from GPIO 6.
So hardware seems to be absolutely fine, based on this test both Toslink transmitters behave identically. Bizarrely, the system seems to favor SPDIF 1, no matter the physical connection (GPIO 6 or GPIO 7). SPDIF 2, even when activated in isolation, would not work, irrespective of GPIO pin.
D90SE runs the latest firmware version. E30 II was purchased one week ago, have not checked but it must be running a fairly recent firmware version I'd imagine. But again, since they work absolutely fine with prior versions of dspi, I'd not expect this to play an important role here.