Hello! Could you please confirm that you have been using
this release? It was posted last night without an announcement, so may not have been spotted. I left it playing for several hours last night under macOS with frequent stops, starts source switches and was unable to provoke any underruns. I'll be testing Windows tonight.
While testing, did you perform any preset switching or save operations?
Regarding your questions, the LED and GPIOs will soon be user configurable. 96KHz isn't actively supported but I will be patching it once the current changes are complete.
By any chance, have you been attempting to output 96KHz? That would explain your distorted audio.