The HE4XX around 0 degrees at 1kHz:Look at the scale on the right side of the bottom (phase) plot... 1kHz is at 0°. It looks like either the polarity issue has been resolved in the current HE400SE or..
the polarity is flipped somewhere in the chain.
To check for that you need to measure the HD600 or HD800 and see if 1kHz is around 0° or at +(or -) 180°
When HD600 (or 800) is around +/- 180° then the polarity of your HE400SE is flipped.
When HD600 (or 800) is around 0° then the polarity of your HE400SE is not flipped any more.
HD800 around 0 degrees at 1kHz:
This means then that they've fixed the absolute phase in HE400SE then, I'll include HE400SE again:
Had a feeling you wanted this zoomed in beyond what the default screen gave me, this is zoomed in a bit for HE400SE:I think the simplest way to check polarity is from the impulse response - try clicking the 'Impulse' tab instead of 'SPL & Phase'.
Either way, based on what solderdude was saying re the 1kHz at 0 degrees, then it looks like they've fixed the absolute phase to be correct now for HE400SE, I guess that's a good thing for the purists!