You are describing the sonic characteristics of the Ultracurve well... early digital can be improved, though it should be asked is it worth it?
Everything connected after the Ultracurve will have the characteristics you describe.
These characteristics will be further exacerbated by using metal dome tweeters.
The external options are:
Only use engineered quality coax to connect the digital signals, it's direct unlike spdif/ opticals.
Get a professional filter on the electric mains power to supply all digital devices, ones with coil inductors, not the capacitor only type, which are next to useless.
You will find it difficult to get a low pass filter below 10Khz at the rated current required, 100Khz is fairly standard. This is mains electric, mistakes are not optional, take all precautions.
Internals options are complex, for the experienced and will require the service manual, generally:
Cleaning up the noise into and outputting from all regulators to all digital power consumer chips using MLCC caps to the chips data sheets specs will make a difference.
Doing the same to the DAC's with C0G/NP0 MLCC's to the chips spec will make a big difference, or X7R type if the specified values are larger.
The SMPS power supply will be able to be cleaned up with filters on the outputs.
First Check/ replace the chopper chips as these degrade with time, these are a huge source of noise.
Playing about with everything else after the Ultracurve is a waste of time, it's not the problem, digital square wave noise is what you are trying to reduce.