I know that you don't see any reason (electrically) why it would be the case, because I came to the same conclusion, and it sounds like OP in this thread did as well. I don't have any explanation for why the internal amps seem to be invulnerable to ground loops introduced via the HDMI inputs but the pre-outs are. I don't have an answer or explanation. The only solution for me was to filter the channels that I use pre-outs for using the device I posted above. For the balanced portion of my system, this obviously doesn't apply.
I do however think that you're making a logical leap in assuming that the signal path is identical in terms of ground loop isolation between the internal amps and the pre-outs. It's convenient to think that that's how it's wired internally, but I doubt it is.
That is not really even an assumption on my part, in fact, it is 100% logical because:
- there is only one physical original connection point, that is at the volume control IC, the NJU72343, from there it would go through some switch ICs (NJU72750), opamps, HDAMs (Marantz only) and would eventually branches off to the power amp inputs, P/H output, and pre outs. I would agree that the connections to the power amp inputs would most likely involve no cabling, just pcb traces, while the pre out branch would likely involve short, but really short wires to the RCA connectors.
- You mentioned:
The conditions in which this "noise" enters the signal chain is pretty specific, so it's not at all surprising that most people don't encounter it. I asked a clarifying question because you don't have your system listed in your signature and I have no way of knowing what input sources you're using
If you believe this is the issue, then the internal power amps should be affected too, logically right? Unless the power amp section has some ways to cancel/filter out the noise, as you alluded to, in another earlier post:
I think it's kinda funny that the internal amps are obviously shielded/protected from HDMI ground loops but somehow they weren't able to apply the same protection to the pre-amp outs. Kinda wild.
but wasn't that your assumption or you got it from some reliable source? I have seen a few schematic and did not see such circuitry/components to cover HDMI ground loops. Granted, the X3900H was newly launched so there's no available service manual for me to access, but historically, the signal path being discussed are very similar if not virtually identical for the Denon 3000/4000/6000 series, hard to imagine the X3900H would do worse, but anything is possible.
Based on the above, I still think, as you mentioned already, that we really don't the explanation...., though I am of the opinion, just opinion, that if you are getting the noise issue with a specific input, or specific media source output device such as the HTPC you mentioned, or something like one of those Nvidia device someone might have mentioned, then there would likely be some issues/defects of the specific X3900H units, but not some inherent design related issues with the preamp/DAC section as such.
So first question remain, in you case, is it specific to a particular input, or source input/output device, sorry I have to ask I thought the answer to this question is yes but I am not sure.
The internal amps likely have their own dedicated traces on the PCB from one stage to the other, where the pre-outs have to be routed to the back panel and broken out into 9-11 separate RCA jacks. Denon also probably had to think about optimizing the outputs to be compatible with the largest number of amplifiers, something they wouldn't have to care about if they were just driving the internal amps since it's a closed loop that they are managing.
All of those design considerations are why I don't think the RCA outputs are just (figuratively speaking) alligator clips that splice off of the existing preamp > amp circuit.
We are basically saying the same, that using pre outs will invariably involve the use of interconnects, but that's all external, so can blame the preamp circuitry. The internal connections between the preamp output, at the volume IC are likely very short pieces of wires that wouldn't pick up much noise at all. If anything, the internal power amp will for sure inherent additional noise because of the NJU72750 multiplex IC switches ahead of it, there are not present/needed for the pre outs path.