I was reading an interview with the Marantz HD-DAC 1 designers, and they were saying the power supply stage is the most difficult to design. Perhaps that explains the lack of tightness in the bass. That wouldn't show up in a single or 32 tone test. Electricity is slippery in the exteme and even under the high voltage conditions spin networks can work against the flow. Intercomponent shunt and intercomponent impedances cause problems outside the DAC chip as you've observed.