Okay. Any suggestions for the design and amp strategy? ...the electronics beneath the actual speaker in a separate area, ... help not have any issues between the backwards audio waves (idk if there is another name?)
-Since you're using a woofer with smaller xmax, design the enclosure to get the bass response you want (best you can) and don't rely on crossover/amp boost to get it. Build a model in VituixCAD, that will allow you to include the baffle step in the woofer model.
----Example: There is a thing called a linkwitz transform. It allows you to take a woofer in a sealed enclosure and make it have the response of a different alignment. So you could put a driver in a "too small" enclosure, and then get the response of a larger cabinet, or vice versa. Moving between the curves below. Don't do that with your woofer. You need a bunch more xmax to pull this off. The linkwitz transform only works on a sealed enclosure anyway.
-Don't forget amplifiers get hot. Even class D amps. Most active speakers have a metal plate on the back, which doubles as a heat sink in addition to being where all the electronics are mounted. If you moved the electronics section to the back wall you can keep the acoustics isolated and still provide for a heatsink and easy access for future repair needs. Check out the link below, this is from Hypex's website for commercial amp applications. It has some info on class D amps and thermal requirements.
----https://www.hypex.nl/media/b8/33/ac/1686146768/AN_Thermal_design.pdf
-The separate chamber is likely overkill though. If you mount the electronics to the bottom of the cabinet, that back wall is still available for damping material. A bass reflex cabinet will have some air movement naturally, and it looks like most of your electronics come with fans.
-How much space is all that electronics going to take up? Make sure you can fit it all in. You'll end up with dead space in the passive speaker, which you'll need to take up so you have the same enclosure response.